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Original Article |
1 Discipline of Pathology, School of Medicine, Griffith University, PMB 50 Gold Coast Mail Centre, Queensland 9726, Australia
2 Department of Surgery, Faculty of Medicine, University of Hong Kong, Pokfulam Road, Hong Kong, China
Correspondence: Address correspondence and reprint requests to: Alfred King Yin Lam, MBBS, MD, PhD, FRCPA; E-mail: a.lam{at}griffith.edu.au
| ABSTRACT |
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Methods: p16 gene alterations were investigated in 44 patients with PTC (9 men, 35 women) by immunohistochemistry, reverse transcriptasepolymerase chain reaction and methylation-specific polymerase chain reaction. The findings were correlated with their clinicopathological features.
Results: p16 protein expression, mRNA alterations, and promoter methylation were detected in 89% (n = 39), 77% (n = 33), and 41% (n = 18) of patients with PTC, respectively. There was no marked relationship between p16 protein expression, mRNA alteration, and promoter methylation. In follicular variant of PTC (FVPTC), there was a frequent lack of p16 protein expression and promoter methylation. PTCs showing p16 promoter methylation were often associated with a high AMES (age, metastasis to distant sites, extrathyroidal invasion, size) risk group and advanced pTNM (tumorlymph nodemetastasis) stages.
Conclusions: p16 gene alterations are common and correlate with histological features and biological aggressiveness in PTC, suggesting that they might play an important role in its pathogenesis.
Key Words: p16 Expression Methylation Papillary thyroid carcinoma
| INTRODUCTION |
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p16 gene encodes p16 protein that competes with cyclin D for binding to CDK4. This inhibits the ability of the cyclin DCDK4 complex to phosphorylate Rb (retinoblastoma), thus causing cell cycle arrest in the late G1 phase.6 In human cancers, p16 gene alterations can occur as gene deletion, point mutation, and methylation of gene promoter. Methylation is an epigenetic modification in which the gene activity is controlled by adding methyl groups (CH3) to specific cytosines of the DNA. Hypermethylation of the suppressor gene can silence the function of the gene.
PTC is the most common type of thyroid cancer.7 Alterations of RET and BRAF genes have been noted in a great proportion of patients with PTC.8,9 However, our understanding of the pathway toward carcinogenesis in PTC is incomplete. Because abnormalities in the control of cell cycle checkpoints are common in carcinogenesis, it is likely that p16 alterations may play a role in the pathogenesis of PTC. In the literature, the roles of p16 alterations in PTC have not been clearly defined.10 In this study, we investigated the different aspects of p16 alterations in PTC, and we studied the relationship between p16 alterations and clinicopathological parameters.
| MATERIALS AND METHODS |
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The pathology slides of the patients with PTC were classified by one of us (A.K.Y.L.) according to the criteria defined by the World Health Organization.11 The size and histological features of the tumors were noted during pathological examination. The patients were operated on by a single team of surgeons and were managed under a standard protocol. Patients were followed up and attended by both surgeons and oncologists at a combined thyroid cancer clinic. Tumor risk profile was assigned according to commonly adopted AMES (age, metastasis to distant sites, extrathyroidal invasion, size) risk group stratification and International Union Against Cancer pTNM (tumorlymph nodemetastasis) staging.1214
p16 Protein by Immunohistochemistry
Paraffin blocks of the thyroid specimens were selected for immunohistochemical study. The antibody p16 INK4a used was a mouse monoclonal antibody (Biocare Medical, Walnut Creek, CA). Four-micron-thick sections were cut from the paraffin blocks, mounted on polylysine-coated slides, and stained with hematoxylin and eosin for light microscopy. Wax was removed from the paraffin sections with xylene, and the specimens were rehydrated in descending alcohols. The sections were immersed into 10 mM citrate buffer (pH 6), and antigen retrieval was performed with a microwave for 10 minutes at 95°C. The 10 mM citrate buffer (pH 6) was preheated in microwave for 3 minutes at 95°C. Then the sections were blocked for endogenous peroxide with hydrogen peroxide at room temperature for 30 minutes. After blocking with 10% normal goat serum (Invitrogen, Carlsbad, CA) in Tris-buffered saline at room temperature for 1 hour, the sections were incubated with monoclonal antiserum to p16 INK4a (1:100 dilution) or isotype-matched control antibody at 4°C overnight.
On the next day, the slides were defrosted to room temperature and washed with Tris-buffered saline. The slides were incubated with biotinylated secondary antibody (Dako Evision+System, Gloustrup, Denmark) for 45 minutes at 37°C, washed, and visualized with diaminobenzidine substrate. Tissues sections were counterstained in aqueous hematoxylin, mounted in crystal mount, and coverslipped in 50:50 xylene-Permount. In each experiment, paraffin blocks of thyroid carcinoma known to be strongly positive for p16 protein were used as positive controls. Examination of p16 staining was performed with a standard light microscope. Brown nuclear stain was regarded as positive. The positive cases of p16 were graded semiquantitatively into three categories, 1+, 2+, and 3+ (1+ indicates <30% of the tumor cells were positive; 2+,
30% to <70% of the tumor cells were positive; 3+,
70% or more of the tumor cells were positive).
p16 mRNA by Reverse TranscriptasePolymerase Chain Reaction
To determine the relative amount of mRNA transcripts of p16 in tissue samples by reverse transcriptasepolymerase chain reaction (RT-PCR), total RNA was isolated with TriZol reagent (Invitrogen) and treated with DNAse I (Ambion, Austin, TX). cDNA was synthesized with 1 µg of DNAse-treated total RNA by oligo(dT)1218 primer (Invitrogen) by ImProm-II reverse transcriptase (Promega, Madison, WI). Gene-specific primers for p16 and ß-actin housekeeping gene were designed (Table 1
). PCR was performed in 1 x PCR buffer (25 µL) containing 200 µM dNTPs, 1.5 mM MgCl2, and .8 µM of each paired primers with the ABI9700 Thermocycler (Applied Biosystems, Foster City, CA). The PCR was carried out at 94°C for 10 minutes, followed by 35 cycles at 94°C for 30 seconds, 54°C for 30 seconds, and 72°C for 30 seconds, and a final elongation step at 72°C for 10 minutes. The ß-actin housekeeping gene was included in all experiments as an internal control.
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Methylation-Specific PCR of p16
Genomic DNA was extracted from the stored frozen tissue sample by proteinase K digestion and followed by phenol-chloroform extraction. In brief, tissue samples were incubated at 50°C overnight in lysis buffer containing 20 mM of Tris (pH 7.6), 5 mM of ethylenediaminetetraacetic acid (EDTA), .5% sodium dodecyl sulfate, and .2 mg/mL of proteinase K (Invitrogen). DNA was isolated by phenol-chloroform extraction and ethanol precipitation and dissolved in 1 x Tris-EDTA (TE) buffer (.01 M and .001 M Na2EDTA) at pH 8. Then 5 µg of DNA was treated with 3 M sodium hydroxide (NaOH). Bisulfate solution (pH 5.2), which converts unmethylated cytosine but not methylcytosine to uracil, was added and incubated at 37°C overnight. The bisulfite-treated DNA was purified over Qiaex II protocol (Qiagen, Hilden, Germany) and ethanol precipitated. The modified DNA was finally eluted into TE buffer. Postbisulfite treatment was carried out by treating the purified DNA (total 50 µL) with 5.56 µL of 3 M sodium hydroxide at 37°C for 15 minutes, followed by 27.78 µL of 9 M ammonium acetate (NH4OAc) at pH 7. The final concentration was 3 M. The postbisulfite-treated DNA was purified by Qiaex II protocol again and dissolved in 50 µL of TE buffer. CpGenom Universal Methylated DNA (Chemicon, Temecula, CA) was included throughout the experiment as a positive control.
PCR was performed in 1 x PCR buffer (25 µL) containing 200 µM dNTPs, 1.5 mM MgCl2, .8 µM methylated primer, .8 µM unmethylated primer (Table 1
), and bisulfate-modified DNA with the ABI9700 Thermocycler (Applied Biosystems). PCR was carried out at 94°C for 10 minutes, followed by 35 cycles at 94°C for 30 seconds, annealing temperature for 30 seconds and 72°C for 30 seconds, and a final elongation step at 72°C for 10 minutes. The ß-actin housekeeping gene was included in all experiments as an internal control. PCR products were resolved by 2% agarose gel electrophoresis and visualized after staining with ethidium bromide under ultraviolet illumination. If a band was detected in the sample when methylated primer was used, the tumors were regarded as have methylated. The gel images were captured and analyzed by the Syngene CCDBIO acquisition system (Hitachi Genetics).
Because the product size of methylated and unmethylated results differed by only one base, direct sequencing of the methylated and unmethylated PCR products was used to confirm the identifies of the products. PCR products were cut from agarose gel and purified by the QiaQuick gel extraction kit (Qiagen). Their identities were confirmed by nucleotide sequencing from Big Dye Terminator v3.1 cycle sequencing kit by ABI Prism 3100 Genetic Analyzer (Applied Biosystems).
Statistical Analysis
All the data obtained in the study were computerized and analyzed by SPSS version 12.0 software (SPSS, Chicago, IL). Comparisons between groups were performed by Fishers exact test for categorical variables and Students t-test with Yates correction for continuous variables. P <.05 was considered statistically significant.
| RESULTS |
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Immunohistochemical Detection of p16
Overexpression of p16 protein was detected in 39 (89%) of 44 of patients with PTC (Table 2
). The p16 staining was located at the nuclei and the cytoplasm of the tumor cells (Fig. 1
). Staining was grade 1 in 52% (n = 23), grade 2 in 34% (n = 15), and grade 3 in 2% (n = 1) of the patients. Nonneoplastic thyroid tissues adjacent to the carcinomas were negative for p16 protein, and similarly, p16 protein was not found in nodular hyperplasia (n = 9) and poorly differentiated thyroid carcinoma (n = 1).
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p16 mRNA
p16 mRNA was detected in 34 (77%) of 44 and 5 (71%) of 7 patients with PTC and nodular hyperplasia respectively (P = .22, Fishers test) (Fig. 2
). On the other hand, p16 mRNA was not detected in the patient with poorly differentiated carcinoma of thyroid. The clinicopathological features of patients with p16 mRNA detected in the PTC did not differ from those patients with p16 mRNAnegative PTC (Table 3
).
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| DISCUSSION |
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Our current study on a larger number of PTCs showed that all the nontumorous thyroid tissues, including those from the contralateral lobe of the carcinoma and those from nodular goiter, were negative for p16 staining. This differs from previous findings. The difference in findings may be related to the difference in experimental conditions and sensitivity of the antibody used. Nevertheless, in all the series, overexpression of p16 was not observed in nodular goiter. Like the previous studies, we noted that overexpression of p16 was mainly noted in malignant thyroid lesion. p16 immunohistochemical staining was positive in 39 (89%) of 44 patients with PTC, with intensity of grade 2 or 3 in 35%. Also, the finding of this and other studies confirmed that p16 overexpression play a role in the malignant transformation because overexpression was noted in well-differentiated thyroid carcinomas, namely PTC and follicular carcinomas but not in nodular goiter. In this series, the poorly differentiated thyroid carcinoma did not exhibit p16 overexpression. The finding are in agreement with the notion that p16 overexpression is an early event in the carcinogenesis of thyroid cancers. Alternatively, poorly differentiated thyroid carcinoma may be derived from a p16-independent pathway. The lack of p16 overexpression in poorly differentiated thyroid carcinomas should be confirmed in a larger study.
The p16 staining was located in the nuclei and cytoplasm of the tumor cells. Because p16 is a nucleoprotein, the presence of staining in both the nuclei and cytoplasm supports the finding that p16 gene is overexpressed. The change in the subcellular location of the overexpressed nucleoprotein may account for the pathogenesis of PTC. Because of the frequent overexpression of p16 in PTC, it may be used as a marker for PTC in selected patients who are hard to diagnose.
p16 promoter hypermethylation in PTC was rarely reported, and the frequencies of p16 methylation in PTC was reported to be 3 (25%) of 12, 4 (33%) of 12, and 7 (42%) of 16 in three studies.19,21,22 In our study, by performing methylation study of p16 on a large number of PTCs, the frequency of p16 methylation detected in PTC was 18 (41%) of 44. In addition, p16 methylation was demonstrated to be correlated with tumor risk profile. Risk-group stratification as defined by AMES criteria is frequently used to identify high-risk patients with PTC for aggressive surgical and adjuvant treatments. p16 methylation was often more frequently observed in the high-risk PTC group according to AMES risk group stratification and according to presence of advanced tumor as classified by the pTNM staging system.
To our knowledge, this is the first study to show the relationship of p16 alterations in PTC based on p16 protein expression, mRNA expression, and methylation of promoter. There was no marked relationship between the different forms of p16 alterations as detected by these different methods. It is perhaps attributed to the effect of different pathways on the function of p16 that can contribute to the pathogenesis of PTC. In addition, although homozygous deletions of the gene locus 9p21 have been detected in thyroid carcinoma cell lines, lack of p16 alterations have also been reported in thyroid carcinomas.2328 In our study, p16 mRNA or p16 protein was detected in 77% and 89% of PTC, respectively. Thus, it is unlikely that p16 gene deletion plays a major role in the pathogenesis of PTC because most of the PTC retained the p16 mRNA or protein. Furthermore, p16 mRNA could be detected in similar proportion of PTC tumor and nontumor tissue, and the detection of p16 mRNA did not have any relationship with clinicopathological features of PTC. It is apparent that the overexpression of p16 rather than the loss of its protein contributes to the pathogenetic mechanism of PTC.
FVPTC had more favorable clinicopathological features and a better tumor risk group profile than conventional PTC.29 However, the histopathologic diagnosis of FVPTC remains a challenge, and this variant has been overdiagnosed by some pathologists.30 In our published data, which relied on strict pathological criteria, FVPTC accounted for slightly less than 20% of all PTC.7 In addition, we have previously reported that FVPTC shows a different prevalence of cyclooxygenase 2 and RET overexpression when compared with conventional PTC.31,32 In this study, two of the five PTC negative for p16 overexpression were FVPTC, and the difference in p16 overexpression between conventional variant of PTC and FVPTC was large. Also, all three FVPTC did not have any p16 promoter methylation. Although the number of patients with FVPTC being studied was small, our results still support the notion that FVPTC has a different pathogenetic pathway than conventional PTC. Further study with larger number of FVPTC may help to confirm this.
In conclusion, p16 alterations as detected by methylation of p16 promoter and p16 overexpression are common in PTC. These findings imply that p16 alteration is important in the pathogenesis of PTC and that p16 can be a potential biomarker for selected patients with PTC. The lack of expression in certain histological variants and the association with tumor risk profile are of potential importance, and further studies are warranted.
| ACKNOWLEDGMENTS |
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Received for publication June 7, 2006. Accepted for publication October 26, 2006.
| REFERENCES |
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